Package: GenoTriplo 2.2.2
GenoTriplo: Genotyping Triploids/Tetraploids (or Diploids) from Luminescence Data
Genotyping of triploid individuals from luminescence data (marker probeset A and B). Works also for diploids and tetraploids. Three main functions: Create_Dataset_from_file() to build dataset ; Clustering_parallele_from_dir() that regroups individuals with a same genotype based on proximity and Genotyping_parallele_from_dir() that assigns a genotype to each cluster. For Shiny interface use: launch_GenoShiny().
Authors:
GenoTriplo_2.2.2.tar.gz
GenoTriplo_2.2.2.zip(r-4.7-any)GenoTriplo_2.2.2.zip(r-4.6-any)GenoTriplo_2.2.2.zip(r-4.5-any)
GenoTriplo_2.2.2.tgz(r-4.6-any)GenoTriplo_2.2.2.tgz(r-4.5-any)
GenoTriplo_2.2.2.tar.gz(r-4.7-any)GenoTriplo_2.2.2.tar.gz(r-4.6-any)
GenoTriplo_2.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
GenoTriplo/json (API)
| # Install 'GenoTriplo' in R: |
| install.packages('GenoTriplo', repos = c('https://julienrocheigepp.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:31d0bc9750. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 231 | ||
| source / vignettes | OK | 188 | ||
| linux-release | OK | 224 | ||
| macos-release | OK | 123 | ||
| macos-oldrel | OK | 108 | ||
| windows-devel | OK | 76 | ||
| windows-release | OK | 224 | ||
| windows-oldrel | OK | 100 | ||
| wasm-release | OK | 124 |
Exports:ClusteringClustering_from_dirClustering_from_fileClustering_parallele_from_dirCreate_Dataset_from_filecreate_genofilesGenotyping_from_fileGenotyping_parallele_from_dirlaunch_GenoShiny
Dependencies:base64encbslibcachemclicodetoolscommonmarkcowplotcpp11crosstalkdata.tabledigestdoParalleldplyrDTevaluatefarverfastmapfontawesomeforeachfsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvisobanditeratorsjquerylibjsonliteknitrlabelinglaterlazyevallifecyclemagrittrmemoisemimeotelpillarpkgconfigprocessxpromisespsR6rappdirsRColorBrewerRcppRcppEigenrlangrmarkdownRmixmodS7sassscalesshinyshinyBSshinyFilesshinythemessourcetoolsstringistringrtibbletidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Clustering function | Clustering |
| Clustering function from directory | Clustering_from_dir |
| Clustering function from file | Clustering_from_file |
| Launch parallel clustering from directory | Clustering_parallele_from_dir |
| Create dataset from filename in appropriate format | Create_Dataset_from_file |
| Create files of genotype and indiv/marker stats from genotype .Rdata files | create_genofiles |
| Run genotyping from file | Genotyping_from_file |
| Launch genotyping phase in parallel from directory | Genotyping_parallele_from_dir |
| Shiny App for genotyping | launch_GenoShiny |