Package: GenoTriplo 1.1.3
GenoTriplo: Genotyping Triploids (or Diploids) from Luminescence Data
Genotyping of triploid individuals from luminescence data (marker probeset A and B). Works also for diploids. Two main functions: Run_Clustering() that regroups individuals with a same genotype based on proximity and Run_Genotyping() that assigns a genotype to each cluster. For Shiny interface use: launch_GenoShiny().
Authors:
GenoTriplo_1.1.3.tar.gz
GenoTriplo_1.1.3.zip(r-4.7-any)GenoTriplo_1.1.3.zip(r-4.6-any)GenoTriplo_1.1.3.zip(r-4.5-any)
GenoTriplo_1.1.3.tgz(r-4.6-any)GenoTriplo_1.1.3.tgz(r-4.5-any)
GenoTriplo_1.1.3.tar.gz(r-4.7-any)GenoTriplo_1.1.3.tar.gz(r-4.6-any)
GenoTriplo_1.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
GenoTriplo/json (API)
| # Install 'GenoTriplo' in R: |
| install.packages('GenoTriplo', repos = c('https://julienrocheigepp.r-universe.dev', 'https://cloud.r-project.org')) |
- GenoTriplo_to_clust - Example of dataset for clustering
- GenoTriplo_to_geno - Example of dataset for genotyping
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:7f9c58e267. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 163 | ||
| source / vignettes | OK | 211 | ||
| linux-release-x86_64 | OK | 166 | ||
| macos-release-arm64 | OK | 121 | ||
| macos-oldrel-arm64 | OK | 101 | ||
| windows-devel | OK | 95 | ||
| windows-release | OK | 121 | ||
| windows-oldrel | OK | 118 | ||
| wasm-release | OK | 124 |
Exports:ClusteringCreate_Datasetlaunch_GenoShinyRun_ClusteringRun_Genotyping
Dependencies:base64encbslibcachemclicodetoolscommonmarkcowplotcpp11crosstalkdigestdoParalleldplyrDTevaluatefarverfastmapfontawesomeforeachfsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvisobanditeratorsjquerylibjsonliteknitrlabelinglaterlazyevallifecyclemagrittrmemoisemimeotelpillarpkgconfigprocessxpromisespspurrrR6rappdirsRColorBrewerRcppRcppEigenrlangrmarkdownRmixmodS7sassscalesshinyshinyBSshinythemessourcetoolsstringistringrtibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Clustering function | Clustering |
| Create dataset in appropriate format | Create_Dataset |
| Example of dataset for clustering | GenoTriplo_to_clust |
| Example of dataset for genotyping | GenoTriplo_to_geno |
| Shiny App for genotyping | launch_GenoShiny |
| Launch parallel clustering | Run_Clustering |
| Launch genotyping phase in parallel | Run_Genotyping |
