R-universe - julienrocheigepp (JulienRocheIGEPP)

APIS - Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents

Parentage assignment package. Parentage assignment is performed based on observed average Mendelian transmission probability distributions or Exclusion. The main functions of this package are the function APIS_2n(), APIS_3n() and launch_APIShiny(), which perform parentage assignment.

Last updated

2.30 score 568 downloads

GenoTriplo - Genotyping Triploids/Tetraploids (or Diploids) from Luminescence Data

Genotyping of triploid individuals from luminescence data (marker probeset A and B). Works also for diploids and tetraploids. Three main functions: Create_Dataset_from_file() to build dataset ; Clustering_parallele_from_dir() that regroups individuals with a same genotype based on proximity and Genotyping_parallele_from_dir() that assigns a genotype to each cluster. For Shiny interface use: launch_GenoShiny().

Last updated

1.30 score 378 downloads